At that moment a cry was heard, and was repeated by everybody present: "To San Marco, to San Marco!" The rioters, few at first, were recruited by all the populace as they swept along the streets, and at last reached the convent, dashing like an angry sea against the wall.
The doors, closed on Savonarala's entrance, soon crashed before the vehement onset of the powerful multitude, which struck down on the instant every obstacle it met: the whole convent was quickly flooded with people, and Savonarola, with his two confederates, Domenico Bonvicini and Silvestro Maruffi, was arrested in his cell, and conducted to prison amid the insults of the crowd, who, always in extremes, whether of enthusiasm or hatred, would have liked to tear them to pieces, and would not be quieted till they had exacted a promise that the prisoners should be forcibly compelled to make the trial of fire which they had refused to make of their own free will.
Alexander VI, as we may suppose, had not been without influence in bringing about this sudden and astonishing reaction, although he was not present in person; and had scarcely learned the news of Savonarola's fall and arrest when he claimed him as subject to ecclesiastical jurisdiction.

But in spite of the grant of indulgences wherewith this demand was accompanied, the Signoria insisted that Savonarola's trial should take place at Florence, adding a request so as not to appear to withdraw the accused completely from the pontifical authority--that the pope would send two ecclesiastical judges to sit in the Florentine tribunal.

Alexander, seeing that he would get nothing better from the magnificent republic, sent as deputies Gioacchino Turriano of Venice, General of the Dominicans, and Francesco Ramolini, doctor in law: they practically brought the sentence with them, declaring Savonarola and his accomplices heretics, schismatics, persecutors of the Church and seducers of the people.
The firmness shown by the Florentines in claiming their rights of jurisdiction were nothing but an empty show to save appearances; the tribunal, as a fact, was composed of eight members, all known to be fervent haters of Savonarola, whose trial began with the torture.

The result was that, feeble in body constitutionally nervous and irritable, he had not been able to endure the rack, and, overcome by agony just at the moment when the executioner had lifted him up by the wrists and then dropped him a distance of two feet to the ground, he had confessed, in order to get some respite, that his prophecies were nothing mare than conjectures.

If is true that, so soon as he went back to prison, he protested against the confession, saying that it was the weakness of his bodily organs and his want of firmness that had wrested the lie from him, but that the truth really was that the Lord had several times appeared to him in his ecstasies and revealed the things that he had spoken.